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ERX12369337: Illumina HiSeq 4000 paired end sequencing
1 ILLUMINA (Illumina HiSeq 4000) run: 166.4M spots, 33.6G bases, 11.8Gb downloads

Submitted by: University of Oregon, Institute of Ecology and Evolution (University of Oregon, Institute of Ecology and Evo)
Study: Chromosome-level genome assembly for Caenorhabditis brenneri, strain CFB2252
show Abstracthide Abstract
The Caenorhabditis brenneri strain CFB2252 originated from a single gravid female found in a decaying marigold flower in Shyamnagar, India. The strain underwent a total of 90 generations of inbreeding. We generated a chromosome-level assembly using long-read PacBio data, chromosome conformation capture (Hi-C) sequence data, short-read Illumina data, and individual nematode PacBio HiFi data. We used RNA-seq, PacBio IsoSeq data, and protein sequences derived from other Caenorhabditis species for the genome annotation.
Sample: Caenorhabditis brenneri, strain CFB2252
SAMEA115432436 • ERS18594236 • All experiments • All runs
Library:
Name: Mixed developmental stage RNA-seq
Instrument: Illumina HiSeq 4000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Runs: 1 run, 166.4M spots, 33.6G bases, 11.8Gb
Run# of Spots# of BasesSizePublished
ERR12997162166,402,74933.6G11.8Gb2024-07-21

ID:
33931362

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